HL_3CXC_075

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

3CXC|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CXC_075 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0661

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3CXC|1|9|U|3033
3CXC|1|9|A|3034
3CXC|1|9|C|3035
3CXC|1|9|C|3036
3CXC|1|9|C|3037
3CXC|1|9|A|3038
3CXC|1|9|U|3039
3CXC|1|9|C|3040
3CXC|1|9|C|3041
3CXC|1|9|C|3042
3CXC|1|9|G|3043
3CXC|1|9|A|3044
3CXC|1|9|A|3045
3CXC|1|9|C|3046
3CXC|1|9|A|3047

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

RIBOSOMAL PROTEIN L5

Chain M

RIBOSOMAL PROTEIN L18