HL_3DD2_001
3D structure
- PDB id
- 3DD2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an RNA aptamer bound to human thrombin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.9 Å
Loop
- Sequence
- (CFL)(UFT)GAAG
- Length
- 6 nucleotides
- Bulged bases
- 3DD2|1|B|A|14
- QA status
- Modified nucleotides: CFL, UFT
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_46501.1
- Basepair signature
- cWW-cWS
- Number of instances in this motif group
- 2
Unit IDs
3DD2|1|B|CFL|11
3DD2|1|B|UFT|12
3DD2|1|B|G|13
3DD2|1|B|A|14
3DD2|1|B|A|15
3DD2|1|B|G|16
Current chains
- Chain B
- RNA (26-MER)
Nearby chains
- Chain H
- Thrombin heavy chain
- Chain L
- Thrombin light chain
Coloring options: