3D structure

PDB id
3DD2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an RNA aptamer bound to human thrombin
Experimental method
X-RAY DIFFRACTION
Resolution
1.9 Å

Loop

Sequence
(CFL)(UFT)GAAG
Length
6 nucleotides
Bulged bases
3DD2|1|B|A|14
QA status
Modified nucleotides: CFL, UFT

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46501.1
Basepair signature
cWW-cWS
Number of instances in this motif group
2

Unit IDs

3DD2|1|B|CFL|11
3DD2|1|B|UFT|12
3DD2|1|B|G|13
3DD2|1|B|A|14
3DD2|1|B|A|15
3DD2|1|B|G|16

Current chains

Chain B
RNA (26-MER)

Nearby chains

Chain H
Thrombin heavy chain
Chain L
Thrombin light chain

Coloring options:

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