HL_3DIG_002

3D structure

PDB id

3DIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUCCUCCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DIG_002 not in the Motif Atlas

Geometric match to HL_3DIL_002

Geometric discrepancy: 0.0595

The information below is about HL_3DIL_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3DIG|1|X|U|93
3DIG|1|X|U|94
3DIG|1|X|C|95
3DIG|1|X|C|96
3DIG|1|X|U|97
3DIG|1|X|C|98
3DIG|1|X|C|99
3DIG|1|X|C|100
3DIG|1|X|G|101

Current chains

Chain X

RNA (174-MER)

Nearby chains