HL_3DJ2_003

3D structure

PDB id

3DJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DJ2_003 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.0276

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

3DJ2|1|A|G|124
3DJ2|1|A|G|125
3DJ2|1|A|A|126
3DJ2|1|A|A|127
3DJ2|1|A|U|128
3DJ2|1|A|A|129
3DJ2|1|A|C|130

Current chains

Chain A

RNA (174-MER)

Nearby chains