HL_3EOH_004

3D structure

PDB id

3EOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined group II intron structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

3EOH|1|A|G|179, 3EOH|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3EOH_004 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.126

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3EOH|1|A|U|178
3EOH|1|A|G|179
3EOH|1|A|C|180
3EOH|1|A|A|181
3EOH|1|A|U|182
3EOH|1|A|A|183
3EOH|1|A|A|184
3EOH|1|A|C|185
3EOH|1|A|A|186
3EOH|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*UP*UP*AP*UP*UP*A)-3'