HL_3F2Y_004

3D structure

PDB id

3F2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the FMN riboswitch bound to FMN, Mn2+ soak.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

3F2Y|1|X|U|74, 3F2Y|1|X|U|75

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3F2Y_004 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.0712

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

3F2Y|1|X|G|68
3F2Y|1|X|U|69
3F2Y|1|X|G|70
3F2Y|1|X|A|71
3F2Y|1|X|A|72
3F2Y|1|X|A|73
3F2Y|1|X|U|74
3F2Y|1|X|U|75
3F2Y|1|X|C|76

Current chains

Chain X

FMN riboswitch

Nearby chains