HL_3G4S_056

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

3G4S|1|0|A|2302, 3G4S|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G4S_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0696

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3G4S|1|0|C|2298
3G4S|1|0|G|2299
3G4S|1|0|A|2300
3G4S|1|0|A|2301
3G4S|1|0|A|2302
3G4S|1|0|A|2303
3G4S|1|0|G|2304
3G4S|1|0|A|2305
3G4S|1|0|U|2306
3G4S|1|0|A|2307
3G4S|1|0|U|2308
3G4S|1|0|C|2309
3G4S|1|0|G|2310

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e