HL_3G6E_019

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAUC

Length

7 nucleotides

Bulged bases

3G6E|1|0|G|672, 3G6E|1|0|A|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_019 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.044

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

3G6E|1|0|G|670
3G6E|1|0|A|671
3G6E|1|0|G|672
3G6E|1|0|U|673
3G6E|1|0|A|674
3G6E|1|0|U|675
3G6E|1|0|C|676

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P