HL_3G6E_051

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUCAGUAG

Length

9 nucleotides

Bulged bases

3G6E|1|0|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_051 not in the Motif Atlas

Homologous match to HL_4V9F_051

Geometric discrepancy: 0.0404

The information below is about HL_4V9F_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3G6E|1|0|C|1990
3G6E|1|0|A|1991
3G6E|1|0|U|1992
3G6E|1|0|C|1993
3G6E|1|0|A|1994
3G6E|1|0|G|1995
3G6E|1|0|U|1996
3G6E|1|0|A|1997
3G6E|1|0|G|1998

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14P