HL_3G6E_052

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

3G6E|1|0|C|2071, 3G6E|1|0|G|2072, 3G6E|1|0|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0302

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

3G6E|1|0|G|2068
3G6E|1|0|U|2069
3G6E|1|0|G|2070
3G6E|1|0|C|2071
3G6E|1|0|G|2072
3G6E|1|0|G|2073
3G6E|1|0|A|2074
3G6E|1|0|G|2075
3G6E|1|0|U|2076
3G6E|1|0|C|2077

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain Y

50S ribosomal protein L32e