HL_3G6E_060

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_060 not in the Motif Atlas

Homologous match to HL_4V9F_060

Geometric discrepancy: 0.046

The information below is about HL_4V9F_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3G6E|1|0|C|2411
3G6E|1|0|G|2412
3G6E|1|0|A|2413
3G6E|1|0|A|2414
3G6E|1|0|A|2415
3G6E|1|0|G|2416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e