HL_3G6E_064

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GU(OMU)(OMG)UUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G6E_064 not in the Motif Atlas

Homologous match to HL_4V9F_064

Geometric discrepancy: 0.0473

The information below is about HL_4V9F_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3G6E|1|0|G|2585
3G6E|1|0|U|2586
3G6E|1|0|OMU|2587
3G6E|1|0|OMG|2588
3G6E|1|0|U|2589
3G6E|1|0|U|2590
3G6E|1|0|C|2591
3G6E|1|0|G|2592
3G6E|1|0|C|2593

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P