HL_3I55_055

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3I55|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3I55_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.1009

The information below is about HL_4V9F_055

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3I55|1|0|C|2281
3I55|1|0|U|2282
3I55|1|0|G|2283
3I55|1|0|G|2284
3I55|1|0|G|2285
3I55|1|0|G|2286
3I55|1|0|C|2287
3I55|1|0|G|2288
3I55|1|0|G|2289

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

DNA/RNA (5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*AP*CP*C)-3')

Chain H

50S ribosomal protein L10e