HL_3ID5_002

3D structure

PDB id

3ID5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA

Experimental method

X-RAY DIFFRACTION

Resolution

4.01 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

3ID5|1|H|U|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3ID5_002 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2253

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3ID5|1|H|G|17
3ID5|1|H|U|18
3ID5|1|H|U|19
3ID5|1|H|C|20
3ID5|1|H|G|21
3ID5|1|H|C|22

Current chains

Chain H

half C/D RNA

Nearby chains

Chain E

Pre mRNA splicing protein