HL_3IIN_002

3D structure

PDB id

3IIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Plasticity of the kink turn structural motif

Experimental method

X-RAY DIFFRACTION

Resolution

4.18 Å

Loop

Sequence

CGCCCG

Length

6 nucleotides

Bulged bases

3IIN|1|B|G|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IIN_002 not in the Motif Atlas

Geometric match to HL_1U6B_002

Geometric discrepancy: 0.2357

The information below is about HL_1U6B_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

3IIN|1|B|C|70
3IIN|1|B|G|71
3IIN|1|B|C|72
3IIN|1|B|C|73
3IIN|1|B|C|74
3IIN|1|B|G|75

Current chains

Chain B

Group I intron

Nearby chains