HL_3IYR_004

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GGCCACGCCCUCUAACC

Length

17 nucleotides

Bulged bases

3IYR|1|A|C|197, 3IYR|1|A|A|206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IYR_004 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3283

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3IYR|1|A|G|192
3IYR|1|A|G|193
3IYR|1|A|C|194
3IYR|1|A|C|195
3IYR|1|A|A|196
3IYR|1|A|C|197
3IYR|1|A|G|198
3IYR|1|A|C|199
3IYR|1|A|C|200
3IYR|1|A|C|201
3IYR|1|A|U|202
3IYR|1|A|C|203
3IYR|1|A|U|204
3IYR|1|A|A|205
3IYR|1|A|A|206
3IYR|1|A|C|207
3IYR|1|A|C|208

Current chains

Chain A

tmRNA

Nearby chains