HL_3IZ4_001

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGGCGGUUGGC

Length

11 nucleotides

Bulged bases

3IZ4|1|A|G|55, 3IZ4|1|A|G|61

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IZ4_001 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2047

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3IZ4|1|A|G|53
3IZ4|1|A|G|54
3IZ4|1|A|G|55
3IZ4|1|A|C|56
3IZ4|1|A|G|57
3IZ4|1|A|G|58
3IZ4|1|A|U|59
3IZ4|1|A|U|60
3IZ4|1|A|G|61
3IZ4|1|A|G|62
3IZ4|1|A|C|63

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains