HL_3J0D_004

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3J0D|1|C|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0D_004 not in the Motif Atlas

Geometric match to HL_7RQB_049

Geometric discrepancy: 0.0845

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

3J0D|1|C|G|1949
3J0D|1|C|G|1950
3J0D|1|C|U|1951
3J0D|1|C|A|1952
3J0D|1|C|A|1953
3J0D|1|C|G|1954
3J0D|1|C|U|1955
3J0D|1|C|U|1956
3J0D|1|C|C|1957

Current chains

Chain C

ribosomal 23S RNA

Nearby chains

Chain E

ribosomal 23S RNA

Chain H

ribosomal 16S RNA

Chain h

ribosomal 16S RNA