HL_3J0D_005

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3J0D|1|D|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0D_005 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.1124

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

3J0D|1|D|C|2248
3J0D|1|D|U|2249
3J0D|1|D|G|2250
3J0D|1|D|G|2251
3J0D|1|D|G|2252
3J0D|1|D|G|2253
3J0D|1|D|C|2254
3J0D|1|D|G|2255
3J0D|1|D|G|2256

Current chains

Chain D

ribosomal 23S RNA

Nearby chains

Chain J

Ribosome-recycling factor