HL_3J0D_006

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0D_006 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0875

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3J0D|1|E|C|2594
3J0D|1|E|G|2595
3J0D|1|E|U|2596
3J0D|1|E|G|2597
3J0D|1|E|A|2598
3J0D|1|E|G|2599

Current chains

Chain E

ribosomal 23S RNA

Nearby chains

Chain J

Ribosome-recycling factor