HL_3J0D_007

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0D_007 not in the Motif Atlas

Geometric match to HL_5B2P_001

Geometric discrepancy: 0.1386

The information below is about HL_5B2P_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3J0D|1|F|C|2658
3J0D|1|F|G|2659
3J0D|1|F|A|2660
3J0D|1|F|G|2661
3J0D|1|F|A|2662
3J0D|1|F|G|2663

Current chains

Chain F

ribosomal 23S RNA

Nearby chains

Chain J

Ribosome-recycling factor