3D structure

PDB id
3J5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmBL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
6.6 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
3J5L|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J5L_017 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0788
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

3J5L|1|A|U|566
3J5L|1|A|U|567
3J5L|1|A|U|568
3J5L|1|A|U|569
3J5L|1|A|G|570
3J5L|1|A|U|571
3J5L|1|A|A|572
3J5L|1|A|U|573
3J5L|1|A|A|574
3J5L|1|A|A|575

Current chains

Chain A
23S ribsomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L15
Chain R
50S ribosomal protein L21

Coloring options:


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