HL_3J5L_062

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_062 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1467

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3J5L|1|A|C|2551
3J5L|1|A|U|2552
3J5L|1|A|G|2553
3J5L|1|A|U|2554
3J5L|1|A|U|2555
3J5L|1|A|C|2556
3J5L|1|A|G|2557

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain 5

5'-R(*CP*(MA6))-3'