HL_3J5L_068

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

3J5L|1|A|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_068 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0655

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3J5L|1|A|G|2819
3J5L|1|A|A|2820
3J5L|1|A|A|2821
3J5L|1|A|G|2822
3J5L|1|A|A|2823
3J5L|1|A|C|2824
3J5L|1|A|G|2825
3J5L|1|A|A|2826
3J5L|1|A|C|2827

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19