HL_3J6B_007

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAAAAA

Length

9 nucleotides

Bulged bases

3J6B|1|A|A|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_007 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3293

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J6B|1|A|U|324
3J6B|1|A|G|325
3J6B|1|A|A|326
3J6B|1|A|A|327
3J6B|1|A|A|328
3J6B|1|A|A|329
3J6B|1|A|A|330
3J6B|1|A|A|331
3J6B|1|A|A|332

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain S

54S ribosomal protein L24, mitochondrial

Chain Z

mitochondrial ribosomal protein YNL122C