HL_3J6B_008

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAACAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_008 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.3482

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

3J6B|1|A|A|347
3J6B|1|A|U|348
3J6B|1|A|A|349
3J6B|1|A|A|350
3J6B|1|A|C|351
3J6B|1|A|A|352
3J6B|1|A|A|353
3J6B|1|A|A|354
3J6B|1|A|U|355

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain b

54S ribosomal protein L25, mitochondrial