HL_3J6B_011
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 3J6B|1|A|A|473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6B_011 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0957
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3J6B|1|A|U|465
3J6B|1|A|U|466
3J6B|1|A|U|467
3J6B|1|A|U|468
3J6B|1|A|G|469
3J6B|1|A|U|470
3J6B|1|A|A|471
3J6B|1|A|U|472
3J6B|1|A|A|473
3J6B|1|A|A|474
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain C
- 54S ribosomal protein L9, mitochondrial
- Chain J
- 54S ribosomal protein L10, mitochondrial
- Chain N
- 54S ribosomal protein L49, mitochondrial
- Chain W
- 54S ribosomal protein L32, mitochondrial
Coloring options: