HL_3J6B_028

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

3J6B|1|A|U|1506

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_028 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3836

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

3J6B|1|A|U|1500
3J6B|1|A|A|1501
3J6B|1|A|U|1502
3J6B|1|A|U|1506
3J6B|1|A|U|1507
3J6B|1|A|A|1508

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain d

Mitochondrial homologous recombination protein 1