HL_3J6B_029

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

3J6B|1|A|U|1568, 3J6B|1|A|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_029 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0753

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3J6B|1|A|C|1564
3J6B|1|A|G|1565
3J6B|1|A|A|1566
3J6B|1|A|C|1567
3J6B|1|A|U|1568
3J6B|1|A|C|1569
3J6B|1|A|A|1570
3J6B|1|A|G|1571

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 3

54S ribosomal protein L27, mitochondrial

Chain O

54S ribosomal protein L22, mitochondrial

Chain Y

54S ribosomal protein L34, mitochondrial