HL_3J6B_031

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAGUC

Length

7 nucleotides

Bulged bases

3J6B|1|A|U|1645, 3J6B|1|A|U|1648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_031 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.2477

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3J6B|1|A|G|1643
3J6B|1|A|U|1644
3J6B|1|A|U|1645
3J6B|1|A|A|1646
3J6B|1|A|G|1647
3J6B|1|A|U|1648
3J6B|1|A|C|1649

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial