HL_3J6B_042

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

3J6B|1|A|A|2330, 3J6B|1|A|U|2331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_042 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1427

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

3J6B|1|A|A|2327
3J6B|1|A|A|2328
3J6B|1|A|A|2329
3J6B|1|A|A|2330
3J6B|1|A|U|2331
3J6B|1|A|U|2332

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 1

54S ribosomal protein L35, mitochondrial

Chain R

54S ribosomal protein L2, mitochondrial