HL_3J6B_043

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUAUA

Length

7 nucleotides

Bulged bases

3J6B|1|A|U|2360, 3J6B|1|A|U|2362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_043 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2344

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3J6B|1|A|U|2357
3J6B|1|A|A|2358
3J6B|1|A|U|2359
3J6B|1|A|U|2360
3J6B|1|A|A|2361
3J6B|1|A|U|2362
3J6B|1|A|A|2363

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 1

54S ribosomal protein L35, mitochondrial

Chain R

54S ribosomal protein L2, mitochondrial

Chain b

54S ribosomal protein L25, mitochondrial