HL_3J6B_048

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAACGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_048 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1658

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3J6B|1|A|C|2622
3J6B|1|A|A|2623
3J6B|1|A|A|2624
3J6B|1|A|A|2625
3J6B|1|A|C|2626
3J6B|1|A|G|2627
3J6B|1|A|A|2628
3J6B|1|A|G|2629

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

54S ribosomal protein L10, mitochondrial

Chain R

54S ribosomal protein L2, mitochondrial

Chain Z

mitochondrial ribosomal protein YNL122C