HL_3J6B_055

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_055 not in the Motif Atlas

Geometric match to HL_5B2P_001

Geometric discrepancy: 0.1011

The information below is about HL_5B2P_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

3J6B|1|A|C|2925
3J6B|1|A|G|2926
3J6B|1|A|C|2927
3J6B|1|A|A|2928
3J6B|1|A|A|2929
3J6B|1|A|G|2930

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain F

54S ribosomal protein L6, mitochondrial