3D structure

PDB id
3J6B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast mitochondrial large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J6B_055 not in the Motif Atlas
Geometric match to HL_5B2P_001
Geometric discrepancy: 0.1011
The information below is about HL_5B2P_001
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

3J6B|1|A|C|2925
3J6B|1|A|G|2926
3J6B|1|A|C|2927
3J6B|1|A|A|2928
3J6B|1|A|A|2929
3J6B|1|A|G|2930

Current chains

Chain A
21S ribosomal RNA

Nearby chains

Chain F
54S ribosomal protein L6, mitochondrial

Coloring options:


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