HL_3J6B_059

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAUACUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6B_059 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1423

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3J6B|1|A|U|3135
3J6B|1|A|U|3136
3J6B|1|A|A|3137
3J6B|1|A|U|3138
3J6B|1|A|A|3139
3J6B|1|A|C|3140
3J6B|1|A|U|3141
3J6B|1|A|A|3142
3J6B|1|A|A|3143

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial

Chain L

54S ribosomal protein L8, mitochondrial

Chain W

54S ribosomal protein L32, mitochondrial