HL_3J71_009
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGGUAAACUCCA
- Length
- 12 nucleotides
- Bulged bases
- 3J71|1|5|G|315, 3J71|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J71_009 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3475
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J71|1|5|U|313
3J71|1|5|G|314
3J71|1|5|G|315
3J71|1|5|U|316
3J71|1|5|A|317
3J71|1|5|A|318
3J71|1|5|A|319
3J71|1|5|C|320
3J71|1|5|U|321
3J71|1|5|C|322
3J71|1|5|C|323
3J71|1|5|A|324
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain a
- Ribosomal protein uL15
- Chain i
- Ribosomal protein eL36
- Chain o
- Ribosomal protein eL42
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