HL_3J71_060

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACCUUUUGGGUUUUAAGC

Length

19 nucleotides

Bulged bases

3J71|1|5|C|4349, 3J71|1|5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J71|1|5|G|4347
3J71|1|5|A|4348
3J71|1|5|C|4349
3J71|1|5|C|4350
3J71|1|5|U|4351
3J71|1|5|U|4352
3J71|1|5|U|4353
3J71|1|5|U|4354
3J71|1|5|G|4355
3J71|1|5|G|4356
3J71|1|5|G|4357
3J71|1|5|U|4358
3J71|1|5|U|4359
3J71|1|5|U|4360
3J71|1|5|U|4361
3J71|1|5|A|4362
3J71|1|5|A|4363
3J71|1|5|G|4364
3J71|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain Q

Ribosomal protein eL18

Chain a

Ribosomal protein uL15

Chain i

Ribosomal protein eL36

Chain o

Ribosomal protein eL42