HL_3J7A_005

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAA

Length

4 nucleotides

Bulged bases

3J7A|1|A|A|274

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7A_005 not in the Motif Atlas

Geometric match to HL_9E6Q_067

Geometric discrepancy: 0.3937

The information below is about HL_9E6Q_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J7A|1|A|U|272
3J7A|1|A|A|273
3J7A|1|A|A|274
3J7A|1|A|A|291

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain H

40S ribosomal protein eS6