3D structure

PDB id
3J7A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUGAGAAAUAG
Length
12 nucleotides
Bulged bases
3J7A|1|A|A|409
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61729.1
Basepair signature
cWW-tWH-tHS-tWH-R-R-R
Number of instances in this motif group
6

Unit IDs

3J7A|1|A|C|399
3J7A|1|A|C|400
3J7A|1|A|U|401
3J7A|1|A|G|402
3J7A|1|A|A|403
3J7A|1|A|G|404
3J7A|1|A|A|405
3J7A|1|A|A|406
3J7A|1|A|A|407
3J7A|1|A|U|408
3J7A|1|A|A|409
3J7A|1|A|G|410

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain 1
40S ribosomal protein eS24
Chain F
40S ribosomal protein eS4
Chain H
40S ribosomal protein eS6
Chain L
40S ribosomal protein eS8

Coloring options:

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