HL_3J7A_024

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUG

Length

5 nucleotides

Bulged bases

3J7A|1|A|U|1362

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7A_024 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.2587

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3J7A|1|A|C|1321
3J7A|1|A|A|1322
3J7A|1|A|U|1362
3J7A|1|A|U|1363
3J7A|1|A|G|1364

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein eS10