HL_3J7A_031

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

3J7A|1|A|A|1856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40871.1

Basepair signature

cWW-cWH-tWH-R-R-R

Number of instances in this motif group

8

Unit IDs

3J7A|1|A|A|1847
3J7A|1|A|U|1848
3J7A|1|A|U|1849
3J7A|1|A|G|1850
3J7A|1|A|C|1851
3J7A|1|A|A|1852
3J7A|1|A|A|1853
3J7A|1|A|U|1854
3J7A|1|A|U|1855
3J7A|1|A|A|1856
3J7A|1|A|U|1857
3J7A|1|A|U|1858

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS13

Chain T

40S ribosomal protein uS14

Chain X

40S ribosomal protein uS19

Chain Y

40S ribosomal protein eS19