HL_3J7Q_011

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_011 not in the Motif Atlas

Homologous match to HL_5TBW_011

Geometric discrepancy: 0.2241

The information below is about HL_5TBW_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J7Q|1|5|U|393
3J7Q|1|5|G|394
3J7Q|1|5|A|395
3J7Q|1|5|A|396
3J7Q|1|5|G|397
3J7Q|1|5|A|398

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22