HL_3J7Q_034

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

3J7Q|1|5|C|2489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_034 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3914

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35941.1

Basepair signature

cWW-F

Number of instances in this motif group

1

Unit IDs

3J7Q|1|5|G|2487
3J7Q|1|5|C|2488
3J7Q|1|5|C|2489
3J7Q|1|5|U|2490
3J7Q|1|5|C|2491

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA