HL_3J7Q_062

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

3J7Q|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_062 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.3555

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3J7Q|1|5|A|4473
3J7Q|1|5|A|4474
3J7Q|1|5|G|4475
3J7Q|1|5|C|4476
3J7Q|1|5|A|4477
3J7Q|1|5|G|4478
3J7Q|1|5|A|4479
3J7Q|1|5|A|4480
3J7Q|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain m

Ribosomal protein eL40