HL_3J7R_018

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

3J7R|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_018 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2701

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J7R|1|5|G|1479
3J7R|1|5|C|1480
3J7R|1|5|C|1481
3J7R|1|5|G|1482
3J7R|1|5|C|1483
3J7R|1|5|G|1484
3J7R|1|5|C|1485
3J7R|1|5|C|1486

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain i

Ribosomal protein eL36