HL_3J7R_019
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J7R_019 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3979
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
3J7R|1|5|A|1560
3J7R|1|5|G|1561
3J7R|1|5|G|1562
3J7R|1|5|A|1563
3J7R|1|5|A|1564
3J7R|1|5|A|1565
3J7R|1|5|C|1566
3J7R|1|5|U|1567
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein eL19
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SN
- Ribosomal protein uS15
- Chain p
- Ribosomal protein eL43
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