HL_3J7R_056
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACAGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J7R_056 not in the Motif Atlas
- Homologous match to HL_8C3A_057
- Geometric discrepancy: 0.2102
- The information below is about HL_8C3A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_72777.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3J7R|1|5|G|4250
3J7R|1|5|A|4251
3J7R|1|5|C|4252
3J7R|1|5|A|4253
3J7R|1|5|G|4254
3J7R|1|5|A|4255
3J7R|1|5|A|4256
3J7R|1|5|A|4257
3J7R|1|5|C|4258
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain J
- Ribosomal protein uL5
- Chain S5
- Transfer RNA; tRNA
Coloring options: