HL_3J7R_080

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

3J7R|1|S2|G|291, 3J7R|1|S2|A|292, 3J7R|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_080 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3286

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J7R|1|S2|G|288
3J7R|1|S2|G|289
3J7R|1|S2|U|290
3J7R|1|S2|G|291
3J7R|1|S2|A|292
3J7R|1|S2|C|293
3J7R|1|S2|U|294
3J7R|1|S2|C|295

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SL

Ribosomal protein uS17