HL_3J7R_086

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGACCCGGG

Length

11 nucleotides

Bulged bases

3J7R|1|S2|A|500, 3J7R|1|S2|C|502, 3J7R|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_086 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1766

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3J7R|1|S2|C|496
3J7R|1|S2|C|497
3J7R|1|S2|C|498
3J7R|1|S2|G|499
3J7R|1|S2|A|500
3J7R|1|S2|C|501
3J7R|1|S2|C|502
3J7R|1|S2|C|503
3J7R|1|S2|G|504
3J7R|1|S2|G|505
3J7R|1|S2|G|506

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SY

Ribosomal protein eS24