HL_3J81_014

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2406

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3J81|1|2|A|519
3J81|1|2|A|520
3J81|1|2|U|521
3J81|1|2|G|522
3J81|1|2|U|523
3J81|1|2|A|524
3J81|1|2|A|525
3J81|1|2|A|526
3J81|1|2|U|527
3J81|1|2|A|528
3J81|1|2|C|529
3J81|1|2|C|530
3J81|1|2|U|531

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24